Alzheimer’s Disease is one of the most prevalent diseases in elderly populations throughout the world and is becoming more significant as the average lifespan increases. Therefore, it is of great importance to understand the causes of this disease. It is well known that Alzheimer’s Disease is an aggregation disorder, in which the natively-disordered Amyloid Beta (A-beta) peptide undergoes a conformational change that leads to aggregation of these peptides and the subsequent formation of oligomers, proto-fibrils and fibrils. However, it is unknown exactly what initiates this aggregation and how age factors into the disease.

Experimental evidence shows that one candidate for the cause of aggregation is the interaction of the A-beta peptide with lipids in the cell membrane. It is of great interest to our group to understand what causes this conformational change and what properties of lipids most exacerbate this effect. Because the A-beta peptide aggregates at such low concentrations, it is difficult to achieve natural experimental conditions without inducing aggregation. Therefore, the molecular dynamics simulations performed in our group are ideal for investigating this interaction at a single peptide level. We are currently investigating how the electrostatic properties of the lipids can effect the conformational change of the peptide through the use of conventional molecular dynamics, free energy calculations with umbrella sampling and replica exchange molecular dynamics.
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